Cran siggenes
WebCran History, Family Crest & Coats of Arms. Origins Available: England. Ireland. Scotland. In ancient Scotland, Cran was first used as a surname by the descendants of the … WebNov 8, 2024 · In siggenes: Multiple Testing using SAM and Efron's Empirical Bayes Approaches. Description Usage Arguments Details Value Author(s) References See Also Examples. View source: R/sam.R. Description. Performs a Significance Analysis of Microarrays (SAM). It is possible to perform one and two class analyses using either a …
Cran siggenes
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WebMar 20, 2024 · trendsceek. Identify genes with spatial expression trends in single-cell gene-expression data. System requirements. trendsceek has been tested on R 3.3.1 and is platform independent (tested on Linux, OS X and Windows). WebMay 1, 2024 · runSAM: Run the sam webapp SAM: Significance analysis of microarrays - simple user interface samr: Significance analysis of microarrays samr.assess.samplesize: Assess the sample size for a SAM analysis samr.assess.samplesize.plot: Make a plot of the results from samr.assess.samplesize samr.compute.delta.table: Compute delta table for …
WebNov 8, 2024 · get.siggenes: Extract significant genes for sets of variables in time... i.rank: Ranks a vector to index; ISOdata: RNA-Seq dataset example for isoforms; ISOdesign: Experimental design for ISOdata dataset example; IsoModel: Detection of genes with Isoforms with different gene... IsoPlot: Plotting the isoform profiles of a specific gene … WebNov 8, 2024 · In siggenes: Multiple Testing using SAM and Efron's Empirical Bayes Approaches. Description Objects from the Class Slots Methods Note Author(s) References See Also Examples. Description. This is a class representation for several versions of the SAM (Significance Analysis of Microarrays) procedure proposed by Tusher et al. (2001).
WebJun 1, 2024 · After spending at least 30 minutes installing dependencies from CRAN and Bioconductor, I was able to get the code to work. ... pls, caret, lattice, igraph, gplots, KEGGgraph, reshape, RColorBrewer, tibble, siggenes, plotly, xcms, CAMERA, fgsea, MSnbase) For whatever reason, I had to install the following packages manually as well: ... WebFeb 28, 2024 · CRAN - Package KernSmooth Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel …
WebFunctions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
WebIdentification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical … taryl fixes all tiresWebAnother possibility is to look into the code for sam, in > > > particular into the functions d.stat and siggenes:::stats.cal. > > > > > > The reason why the FDR is so low in the third example is the very, very > > low > > > estimate for p0. Take a look at the number of falsely called genes > > (False) > > > for about the same number of called ... taryle cpaWebMay 7, 2024 · Warning: replacing previous import ‘igraph::groups’ by ‘xcms::groups’ when loading ‘MetaboAnalystR’. DONE (MetaboAnalystR) preparing 'MetaboAnalystR': (846ms) √ checking DESCRIPTION meta-information ... checking for LF line-endings in source and make files and shell scripts (790ms) checking for empty or unneeded directories. taryl fixes all toothpickWebMar 15, 2024 · CRAN is a network of ftp and web servers around the world that store identical, up-to-date, versions of code and documentation for R. Please use the CRAN mirror nearest to you to minimize network load. Submitting to CRAN . This year's CRAN submission summer break will be from Jul 21, 2024 to Aug 7, 2024. taryl fixes all playlistWebMay 1, 2024 · runSAM: Run the sam webapp SAM: Significance analysis of microarrays - simple user interface samr: Significance analysis of microarrays … taryl fixes all lawn mowersWebFeb 3, 2024 · The output (with warning message) is as follows: Downloading GitHub repo xia-lab/MetaboAnalystR@HEAD These packages have more recent versions available. It is recommended to update all of them. Which would you like to update? 1: All 2: CRAN packages only 3: None 4: mnormt (1.5-7 -> 2.0.2) [CRAN] Enter one or more numbers, … taryl fixes all toolsWeb6 getNet Details The function getExampleData(ExampleData = "SigLncs") obtains a vector of lncRNAs confirmed to be related with breast cancer. The function getExampleData(ExampleData = "Profile") obtains the brigadier\u0027s mouse